{"id":1314,"date":"2016-11-04T21:09:28","date_gmt":"2016-11-04T20:09:28","guid":{"rendered":"http:\/\/eubias.org\/NEUBIAS\/?page_id=1314"},"modified":"2017-05-08T09:58:41","modified_gmt":"2017-05-08T08:58:41","slug":"ts1-barcelona2016","status":"publish","type":"page","link":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/staff\/ts1-barcelona2016\/","title":{"rendered":"TS1 Barcelona,  Sept 2016"},"content":{"rendered":"<h1>NEUBIAS Training School for Facility Staffs: Barcelona, \u00a0Sept 13 &#8211; 16, 2016<\/h1>\n<h2>Topics addressed:<\/h2>\n<div class=\"entry-content\">\n<div id=\"pl-19\">\n<div id=\"pg-19-0\" class=\"panel-grid\">\n<div id=\"pgc-19-0-0\" class=\"panel-grid-cell\">\n<div id=\"panel-19-0-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child panel-last-child\" data-index=\"0\">\n<div class=\"so-widget-sow-editor so-widget-sow-editor-base\">\n<div class=\"siteorigin-widget-tinymce textwidget\">\n<ul>\n<li>BioImage analysis and programming foundations\n<ul>\n<li>ImageJ macro language;\u00a0Macro recorder, editor &amp; macro language; variables &amp; strings;user-defined functions;\u00a0loops &amp;\u00a0conditional execution;\u00a0batch processing and automation<\/li>\n<li>Filtering, segmentation, post-processing &amp;\u00a0measurement<\/li>\n<li>Matlab basics; import, processing and basic\u00a0analysis; Matlab programming<\/li>\n<\/ul>\n<\/li>\n<li>Applications\n<ul>\n<li>Cell nuclei segmentation<\/li>\n<li>3D Colocalization analysis<\/li>\n<li>3D tubular network analysis of blood vessels<\/li>\n<li>Directionality analysis of EB1 movement along microtubules<\/li>\n<li>3D data visualization and registration<\/li>\n<\/ul>\n<\/li>\n<li>&#8220;Present you problem&#8230; code your workflow&#8221;!<\/li>\n<\/ul>\n<p>The official course textbook is\u00a0<a href=\"http:\/\/www.imaging-git.com\/applications\/bioimage-data-analysis-0\">&#8220;Bioimage Data Analysis&#8221;<\/a>, a freely downloadable textbook where more details about most of these topics can be found. Trainees are encouraged to\u00a0bring it either printed or accessible in a tablet\/e-book reader.<\/p>\n<h2>Programme &amp; Schedule<\/h2>\n<p>Coffee breaks are served daily ~11:00 and 16:00,\u00a0lunches at 13:00 [1.5h] and dinners at 21:30!<\/p>\n<p>Day 1 (Sep 13th, Tue)<\/p>\n<ul>\n<li><strong><em>9:00 Registration and welcome<\/em><\/strong><\/li>\n<li>10:00 Intro to IA and workflows<\/li>\n<li>11:30 Introduction to ImageJ macro language<\/li>\n<li>17:00 Batch iJ macro process<\/li>\n<li>20:30 Neubias project<\/li>\n<\/ul>\n<p>Day 2 (Sep 14th, Wed)<\/p>\n<ul>\n<li>9:00 Q&amp;A<\/li>\n<li>9:30 3D Colocalization analysis<\/li>\n<li>14:30 3D Blood vessels<\/li>\n<li><em>18:30 Meet the taggers 1 (casual)<\/em>: opportunity to meet analysts working to build new NEUBIAS resources (see <a href=\"https:\/\/eubias.org\/NEUBIAS\/?page_id=228\">Taggathon<\/a>)<\/li>\n<li><em><strong>19:45.21:00 free time [NEUBIAS members meeting]<\/strong><\/em><\/li>\n<\/ul>\n<p>Day 3 (Sept 15th, Thu)<\/p>\n<ul>\n<li>9:00 Q&amp;A<\/li>\n<li>9:30 Introduction to Matlab<\/li>\n<li>11:30 2D Image processing and data analysis with Matlab<\/li>\n<li>14:303D visualization with Matlab<\/li>\n<li>15:30 3D Image processing and workflows<\/li>\n<li>18:30 EB1 tracking exercise<\/li>\n<li><em>20:00 Meet the taggers 2 (play &amp; tag)<\/em><\/li>\n<\/ul>\n<p>Day 4 (Sept 16th, Fri)<\/p>\n<ul>\n<li>9:00 Q&amp;A<\/li>\n<li>9:30 EB1 trakcing (cont)<\/li>\n<li>14:30 Open session:<em> Present your problem, code your workflow, get help from trainers<\/em><\/li>\n<li><em><strong>18:00 course ends!<\/strong><\/em><\/li>\n<\/ul>\n<h2>Trainers TS#1<\/h2>\n<p><a href=\"https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2015\/08\/Barcelona2016-classPhoto.jpg\"><img fetchpriority=\"high\" class=\"alignnone wp-image-1013 size-large\" src=\"https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2015\/08\/Barcelona2016-classPhoto-1024x558.jpg\" alt=\"barcelona2016-classphoto\" width=\"720\" height=\"392\" srcset=\"https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2015\/08\/Barcelona2016-classPhoto-1024x558.jpg 1024w, https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2015\/08\/Barcelona2016-classPhoto-300x163.jpg 300w, https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2015\/08\/Barcelona2016-classPhoto-768x418.jpg 768w, https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2015\/08\/Barcelona2016-classPhoto.jpg 1920w\" sizes=\"(max-width: 720px) 100vw, 720px\" \/><\/a><\/p>\n<\/div>\n<\/div>\n<div class=\"so-widget-sow-editor so-widget-sow-editor-base\">\n<div class=\"siteorigin-widget-tinymce textwidget\">\n<table id=\"supsystic-table-12\" class=\"supsystic-table border cell-border \" data-features=\"[]\" data-pagination-length=\"50,100,All\" data-lang=\"default\" data-override=\"{&quot;file&quot;:&quot;default&quot;,&quot;emptyTable&quot;:&quot;&quot;,&quot;info&quot;:&quot;&quot;,&quot;infoEmpty&quot;:&quot;&quot;,&quot;infoFiltered&quot;:&quot;&quot;,&quot;lengthMenu&quot;:&quot;&quot;,&quot;search&quot;:&quot;&quot;,&quot;zeroRecords&quot;:&quot;&quot;}\" data-auto-index=\"off\" data-currency-format=\"$1,000.00\" data-head=\"\" data-foot=\"\" data-responsive-mode=\"0\">\n<tbody>\n<tr>\n<td class=\"htCenter color-fcf9f9 bold bg-7d390b\" data-cell-id=\"A1\" data-x=\"0\" data-y=\"1\" data-original-value=\"Trainer\">Trainer<\/td>\n<td class=\"color-fcf9f9 bold bg-7d390b htCenter\" data-cell-id=\"B1\" data-x=\"1\" data-y=\"1\" data-original-value=\"More About...\"><\/td>\n<td class=\"color-fcf9f9 bold bg-7d390b htCenter\" data-cell-id=\"C1\" data-x=\"2\" data-y=\"1\" data-original-value=\"Position\">Position<\/td>\n<td class=\"htCenter color-fcf9f9 bold bg-7d390b\" data-cell-id=\"D1\" data-x=\"3\" data-y=\"1\" data-original-value=\"Where\">Where<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter bg-f2dac9 bold\" data-cell-id=\"A2\" data-x=\"0\" data-y=\"2\" data-colspan=\"4\" data-rowspan=\"1\" data-original-value=\"Invited Trainers\"><\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter bg-f7f5d2 bold\" data-cell-id=\"A3\" data-x=\"0\" data-y=\"3\" data-original-value=\"Benjamin Pavie\">Benjamin Pavie<\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"B3\" data-x=\"1\" data-y=\"3\" data-original-value=\" http:\/\/www.vib.be\/whoiswho\/Pages\/Benjamin-Pavie.aspx?lang=en\"><a href=\"http:\/\/www.vib.be\/whoiswho\/Pages\/Benjamin-Pavie.aspx?lang=en\">http:\/\/www.vib.be\/whoiswho\/Pages\/Benjamin-Pavie.aspx?lang=en<\/a><\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"C3\" data-x=\"2\" data-y=\"3\" data-original-value=\"BioImage Analyst @ VIB\">BioImage Analyst @ VIB<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D3\" data-x=\"3\" data-y=\"3\" data-original-value=\"Leuven, Belgium\">Leuven, Belgium<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A4\" data-x=\"0\" data-y=\"4\" data-original-value=\"Fabrice Cordeli\u00e8res\">Fabrice Cordeli\u00e8res<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B4\" data-x=\"1\" data-y=\"4\" data-original-value=\"http:\/\/www.cgfb.u-bordeaux2.fr\"><a href=\"http:\/\/www.cgfb.u-bordeaux2.fr\">http:\/\/www.cgfb.u-bordeaux2.fr<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C4\" data-x=\"2\" data-y=\"4\" data-original-value=\"BioImage Analyst @ University of Bordeaux\">BioImage Analyst @ University of Bordeaux<\/td>\n<td class=\"htCenter htCenter htCenter bg-f7f5d2\" data-cell-id=\"D4\" data-x=\"3\" data-y=\"4\" data-original-value=\"Bordeaux, France\">Bordeaux, France<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A5\" data-x=\"0\" data-y=\"5\" data-original-value=\"Gaby Martins\">Gaby Martins<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B5\" data-x=\"1\" data-y=\"5\" data-original-value=\"http:\/\/www.gabygmartins.info\/\"><a href=\"http:\/\/www.gabygmartins.info\/\">http:\/\/www.gabygmartins.info\/<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C5\" data-x=\"2\" data-y=\"5\" data-original-value=\"Microscopy @ Gulbenkian Institute of Science\">Microscopy @ Gulbenkian Institute of Science<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D5\" data-x=\"3\" data-y=\"5\" data-original-value=\"Lisbon, Portugal\">Lisbon, Portugal<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter bg-f7f5d2 bold\" data-cell-id=\"A6\" data-x=\"0\" data-y=\"6\" data-original-value=\"Giovanni Cardone\">Giovanni Cardone<\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"B6\" data-x=\"1\" data-y=\"6\" data-original-value=\"https:\/\/www.researchgate.net\/profile\/Giovanni_Cardone\"><a href=\"https:\/\/www.researchgate.net\/profile\/Giovanni_Cardone\">https:\/\/www.researchgate.net\/profile\/Giovanni_Cardone<\/a><\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"C6\" data-x=\"2\" data-y=\"6\" data-original-value=\"BioImage Analyst @ MPI Biochemistry\">BioImage Analyst @ MPI Biochemistry<\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"D6\" data-x=\"3\" data-y=\"6\" data-original-value=\"Martinsried, Germany\">Martinsried, Germany<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter bg-f7f5d2 bold\" data-cell-id=\"A7\" data-x=\"0\" data-y=\"7\" data-original-value=\"Joakim Lindblad\">Joakim Lindblad<\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"B7\" data-x=\"1\" data-y=\"7\" data-original-value=\"http:\/\/www.cb.uu.se\/~joakim\/index_en.html\"><a href=\"http:\/\/www.cb.uu.se\/~joakim\/index_en.html\">http:\/\/www.cb.uu.se\/~joakim\/index_en.html<\/a><\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"C7\" data-x=\"2\" data-y=\"7\" data-original-value=\"BioImage Analyst at Mathematical Institute of the Serbian Academy of Sciences and Arts\">BioImage Analyst at Mathematical Institute of the Serbian Academy of Sciences and Arts<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D7\" data-x=\"3\" data-y=\"7\" data-original-value=\"Belgrade, Serbia\">Belgrade, Serbia<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter bg-f7f5d2 bold\" data-cell-id=\"A8\" data-x=\"0\" data-y=\"8\" data-original-value=\"Kota Miura\">Kota Miura<\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"B8\" data-x=\"1\" data-y=\"8\" data-original-value=\"http:\/\/wiki.cmci.info\/\"><a href=\"http:\/\/wiki.cmci.info\/\">http:\/\/wiki.cmci.info\/<\/a><\/td>\n<td class=\"bg-f7f5d2 htCenter\" data-cell-id=\"C8\" data-x=\"2\" data-y=\"8\" data-original-value=\"BioImage Analyst at EMBL\">BioImage Analyst at EMBL<\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"D8\" data-x=\"3\" data-y=\"8\" data-original-value=\"Heidelberg - Germany\">Heidelberg \u2013 Germany<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter bg-f7f5d2 bold\" data-cell-id=\"A9\" data-x=\"0\" data-y=\"9\" data-original-value=\"Ofra Golani\">Ofra Golani<\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"B9\" data-x=\"1\" data-y=\"9\" data-original-value=\"http:\/\/www.weizmann.ac.il\/lifesci\/idcards\/OfraGolani1673.html\"><a href=\"http:\/\/www.weizmann.ac.il\/lifesci\/idcards\/OfraGolani1673.html\">http:\/\/www.weizmann.ac.il\/lifesci\/idcards\/OfraGolani1673.html<\/a><\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"C9\" data-x=\"2\" data-y=\"9\" data-original-value=\"BioImage Analyst @ Weizmann Institute\">BioImage Analyst @ Weizmann Institute<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D9\" data-x=\"3\" data-y=\"9\" data-original-value=\"Rehovot - Israel\">Rehovot \u2013 Israel<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A10\" data-x=\"0\" data-y=\"10\" data-original-value=\"Paulo Aguiar\">Paulo Aguiar<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B10\" data-x=\"1\" data-y=\"10\" data-original-value=\" http:\/\/www.i3s.up.pt\/research-groups\/host-interaction-and-response-neurobiology-and-neurologic-disorders\/nanobiomaterials\/person\/paulo-aguiar\"><a href=\"http:\/\/www.i3s.up.pt\/research-groups\/host-interaction-and-response-neurobiology-and-neurologic-disorders\/nanobiomaterials\/person\/paulo-aguiar\">http:\/\/www.i3s.up.pt\/research-groups\/host-interaction-and-response-neurobiology-and-neurologic-disorders\/nanobiomaterials\/person\/paulo-aguiar<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C10\" data-x=\"2\" data-y=\"10\" data-original-value=\"Principal investigator @ INEB \/ I3S\">Principal investigator @ INEB \/ I3S<\/td>\n<td class=\"htCenter htCenter htCenter bg-f7f5d2\" data-cell-id=\"D10\" data-x=\"3\" data-y=\"10\" data-original-value=\"Porto - Portugal\">Porto \u2013 Portugal<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A11\" data-x=\"0\" data-y=\"11\" data-original-value=\"Perrine Paul-Gilloteaux\"><\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"B11\" data-x=\"1\" data-y=\"11\" data-original-value=\"https:\/\/www.researchgate.net\/profile\/Perrine_Paul\"><\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"C11\" data-x=\"2\" data-y=\"11\" data-original-value=\"BioImage Analyst @ University of Nantes - FBI - Curie\"><\/td>\n<td class=\"htCenter bg-f7f5d2\" data-cell-id=\"D11\" data-x=\"3\" data-y=\"11\" data-original-value=\"Nantes - France\"><\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A12\" data-x=\"0\" data-y=\"12\" data-original-value=\"Petter Ranefall\">Petter Ranefall<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B12\" data-x=\"1\" data-y=\"12\" data-original-value=\"https:\/\/katalog.uu.se\/profile\/?id=AA229\"><a href=\"https:\/\/katalog.uu.se\/profile\/?id=AA229\">https:\/\/katalog.uu.se\/profile\/?id=AA229<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C12\" data-x=\"2\" data-y=\"12\" data-original-value=\"BioImage Analyst at Center for Image Analysis\">BioImage Analyst at Center for Image Analysis<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D12\" data-x=\"3\" data-y=\"12\" data-original-value=\"Uppsala - Sweden\">Uppsala \u2013 Sweden<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A13\" data-x=\"0\" data-y=\"13\" data-original-value=\"Romain Guiet\">Romain Guiet<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B13\" data-x=\"1\" data-y=\"13\" data-original-value=\" https:\/\/people.epfl.ch\/romain.guiet\"><a href=\"https:\/\/people.epfl.ch\/romain.guiet\">https:\/\/people.epfl.ch\/romain.guiet<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C13\" data-x=\"2\" data-y=\"13\" data-original-value=\"BioImage Analyst at BIOP \/ EPFL\">BioImage Analyst at BIOP \/ EPFL<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D13\" data-x=\"3\" data-y=\"13\" data-original-value=\"Lausanne - Switzerland\">Lausanne \u2013 Switzerland<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f2dac9 bold\" data-cell-id=\"A14\" data-x=\"0\" data-y=\"14\" data-colspan=\"4\" data-rowspan=\"1\" data-original-value=\"Invited Local Trainers (Barcelona)\">Invited Local Trainers (Barcelona)<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A15\" data-x=\"0\" data-y=\"15\" data-original-value=\"Anna Bosch\">Anna Bosch<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C15\" data-x=\"2\" data-y=\"15\" data-original-value=\"Microscopy @ CCiTUB\">Microscopy @ CCiTUB<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D15\" data-x=\"3\" data-y=\"15\" data-original-value=\"Univ. of Barcelona\">Univ. of Barcelona<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A16\" data-x=\"0\" data-y=\"16\" data-original-value=\"Chong Zhang\">Chong Zhang<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B16\" data-x=\"1\" data-y=\"16\" data-original-value=\"http:\/\/simbiosys.upf.edu\/user\/97\"><a href=\"http:\/\/simbiosys.upf.edu\/user\/97\">http:\/\/simbiosys.upf.edu\/user\/97<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C16\" data-x=\"2\" data-y=\"16\" data-original-value=\"BioImage Analyst @ UPF\">BioImage Analyst @ UPF<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D16\" data-x=\"3\" data-y=\"16\" data-original-value=\"Univ. Pompeu Fabra\">Univ. Pompeu Fabra<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A17\" data-x=\"0\" data-y=\"17\" data-original-value=\"S\u00e9bastien Tosi\">S\u00e9bastien Tosi<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B17\" data-x=\"1\" data-y=\"17\" data-original-value=\"http:\/\/adm.irbbarcelona.org\/members\"><a href=\"http:\/\/adm.irbbarcelona.org\/members\">http:\/\/adm.irbbarcelona.org\/members<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C17\" data-x=\"2\" data-y=\"17\" data-original-value=\"BioImage Analyst @ ADM\">BioImage Analyst @ ADM<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D17\" data-x=\"3\" data-y=\"17\" data-original-value=\"IRB Barcelona\">IRB Barcelona<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A18\" data-x=\"0\" data-y=\"18\" data-original-value=\"Manel Bosch\">Manel Bosch<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B18\" data-x=\"1\" data-y=\"18\" data-original-value=\"https:\/\/www.researchgate.net\/profile\/Manel_Bosch\"><a href=\"https:\/\/www.researchgate.net\/profile\/Manel_Bosch\">https:\/\/www.researchgate.net\/profile\/Manel_Bosch<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C18\" data-x=\"2\" data-y=\"18\" data-original-value=\"Microscopy @ CCiTUB\">Microscopy @ CCiTUB<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D18\" data-x=\"3\" data-y=\"18\" data-original-value=\"Univ. of Barcelona\">Univ. of Barcelona<\/td>\n<\/tr>\n<tr>\n<td class=\"htCenter htCenter bg-f7f5d2 bold\" data-cell-id=\"A19\" data-x=\"0\" data-y=\"19\" data-original-value=\"Julien Colombelli\">Julien Colombelli<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"B19\" data-x=\"1\" data-y=\"19\" data-original-value=\"http:\/\/adm.irbbarcelona.org\/members\"><a href=\"http:\/\/adm.irbbarcelona.org\/members\">http:\/\/adm.irbbarcelona.org\/members<\/a><\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"C19\" data-x=\"2\" data-y=\"19\" data-original-value=\"Microscopy @ ADM\">Microscopy @ ADM<\/td>\n<td class=\"htCenter htCenter bg-f7f5d2\" data-cell-id=\"D19\" data-x=\"3\" data-y=\"19\" data-original-value=\"IRB Barcelona\">IRB Barcelona<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n<\/div>\n<p>&nbsp;<\/p>\n<div class=\"so-widget-sow-editor so-widget-sow-editor-base\">\n<div class=\"siteorigin-widget-tinymce textwidget\">\n<h2 class=\"entry-header\">Barcelona Venue &amp; Contact<\/h2>\n<div class=\"entry-content\">\n<div id=\"pl-31\">\n<div id=\"pg-31-0\" class=\"panel-grid\">\n<div id=\"pgc-31-0-0\" class=\"panel-grid-cell\">\n<div id=\"panel-31-0-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child panel-last-child\" data-index=\"0\">\n<div class=\"so-widget-sow-editor so-widget-sow-editor-base\">\n<div class=\"siteorigin-widget-tinymce textwidget\">\n<div>\n<div><img class=\"alignnone\" src=\"http:\/\/bcbt.upf.edu\/bcbt12\/sites\/default\/files\/page-files\/UPF_DTIC_campus_1b_680w.jpg\" width=\"291\" \/>\u00a0<img class=\"alignnone\" src=\"https:\/\/www.upf.edu\/campus\/_img\/upf-aire\/Campus4.jpg\" width=\"300\" \/><\/div>\n<p><img class=\"alignnone\" src=\"https:\/\/www.upf.edu\/bibtic\/_img\/slider\/10_poblenou.png\" width=\"596\" \/><\/p>\n<\/div>\n<p>The first NeuBIAS Workshop will take place at the <a href=\"https:\/\/www.upf.edu\/campus\/en\/comunicacio\/\">Poblenou Campus<\/a>\u00a0of Universitat Pompeu Fabra in Barcelona, where the <a title=\"Department of Information and Communication Technologies\" href=\"http:\/\/www.upf.edu\/dtic\/\" target=\"_blank\" rel=\"noopener noreferrer\">Department of Information and Communication Technologies<\/a> (DTIC) is located.<\/p>\n<p><strong>Address:<\/strong><\/p>\n<p>Tallers Area<br \/>\nCampus Poblenou, Universitat Pompeu Fabra<br \/>\nRoc Boronat 138<br \/>\n08018 Barcelona<br \/>\nCatalonia, Spain<br \/>\n<a href=\"http:\/\/www.upf.edu\/etic\">http:\/\/www.upf.edu\/etic<\/a><\/p>\n<p><strong>Local transportation<\/strong><\/p>\n<p>Poblenou Campus is easily accessible both by public transport: Metro (L1 Gl\u00f2ries, L4 Llacuna),\u00a0 Tram (T4 Ca l\u2019Arany\u00f3, T5 i T6 La Farinera), Train (Clot-Arag\u00f3), and Bus (H14, B25, B20, 192, 92, 42, 40, 7, 6). It is also easily accessible by\u00a0 private transport but parking slots are really reduced.<\/p>\n<p><strong>Maps<\/strong><\/p>\n<div>\n<div><img src=\"https:\/\/www.upf.edu\/campus\/_img\/campus\/comunicacio\/mapa-comunicacio-en.png\" width=\"300\" \/><img src=\"https:\/\/www.upf.edu\/campus\/_img\/campus\/comunicacio\/poblenou-tallers.png\" width=\"280\" \/><\/div>\n<div><a href=\"https:\/\/www.google.com\/maps\/d\/edit?mid=1kHK9GjHTAhUkpdCeER-rzmY1Bzc\" target=\"_blank\" rel=\"noopener noreferrer\">Google maps indicating all the public transportation<\/a><\/div>\n<\/div>\n<p><strong>Contact information<\/strong><\/p>\n<p>Local contact: Chong Zhang (chong.zhang(at)upf(dot)edu)<br \/>\nphone: +34 935422163<\/p>\n<p><strong>Travel and accomodation<\/strong><\/p>\n<p>Please arrange\u00a0your travel by yourself!<\/p>\n<p>Here are our recommendations <strong>upon their availability<\/strong> (<strong>Please refer to &#8220;NEUBIAS UPF WORKSHOP&#8221; in your booking email!<\/strong>):<\/p>\n<p><b>IBIS GLORIAS 99\u00a0<\/b>Ciutat de Granada, 99 Tel: 34 93 300 7777\u00a0<a href=\"http:\/\/ibishotel.com\/\">ibishotel.com<\/a> &#8211; <a href=\"http:\/\/accorhotels.com\/\">accorhotels.com<\/a><\/p>\n<p>UPF price (before 28th July, 2016): 75 \u20ac\u00a0(if stay between Sep 11th and Sep 17th)<\/p>\n<p><b>HOTEL SILKEN DIAGONAL ****<\/b><\/p>\n<p>Diagonal , 205\u00a008018 Barcelona\u00a0Phone: +34 93 489 53 00\u00a0Email: reservas2.diagonal@hoteles-silken.com\u00a0<a href=\"http:\/\/www.hoteles-silken.com\/\">http:\/\/www.hoteles-silken.com<\/a><\/p>\n<p>UPF price (before 28th July, 2016): 99\u00a0\u20ac (Single), 114 \u20ac (double) (booking code: NEUBIAS n\u00ba 1258729<i>,\u00a0<\/i>if stay between Sep 13th and Sep 17th)<\/p>\n<p><b>FOUR POINTS BY SHERATON DIAGONAL ***<\/b><\/p>\n<p>Av.Diagonal,161-163\u00a008018 Barcelona\u00a0Phone: 34 93 486 88 00 \/ Fax: +34 93 309 67 27\u00a0e-mail: reservation@fourpointsbarcelona.com\u00a0<a href=\"http:\/\/www.fourpointsbarcelonadiagonal.com\/\">www.fourpointsbarcelonadiagonal.com<\/a><\/p>\n<p>UPF price (before 28th July, 2016): 104 \u20ac (Single), 114 \u20ac (double)\u00a0(if stay between Sep 11th and Sep 17th)<\/p>\n<p><a href=\"https:\/\/www.google.com\/maps\/d\/edit?mid=1lFRCBki-9yLoB4Dgd9E6uZQ_568\" target=\"_blank\" rel=\"noopener noreferrer\">Google maps indicating hotel locations<\/a><\/p>\n<p>If you have problems with booking (before 28th July) of any of these hotels listed above, please contact Joana (joana.clotet(at)upf(dot)edu).<\/p>\n<\/div>\n<p>Further inquiries \/ Contact<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<p>Please contact Gabriel Martins <em>and<\/em> Fabrice Cordeli\u00e8res for information related to the Training School organization and content:<\/p>\n<p>gaby(at)igc(dot)gulbenkian(dot)pt<\/p>\n<p>fabrice(dot)cordelieres(at)u-bordeaux(dot)fr<\/p>\n<\/div>\n<div class=\"entry-content\">\n<div id=\"pl-31\">\n<div id=\"pg-31-0\" class=\"panel-grid\">\n<div id=\"pgc-31-0-0\" class=\"panel-grid-cell\">\n<div id=\"panel-31-0-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child panel-last-child\" data-index=\"0\">\n<div class=\"so-widget-sow-editor so-widget-sow-editor-base\">\n<p>Kindly sponsored by:\u00a0<img src=\"https:\/\/portal.upf.edu\/documents\/1656590\/1657276\/LOGO+MARIA+DE+MAEZTU2+%282%29.jpg\/76c52f1c-2cb1-49b0-9f12-2a9da59f54d5?t=1458043204560\" \/><\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<p>&nbsp;<\/p>\n<\/div>\n<\/div>\n<\/div>\n<p>Applications were\u00a0closed on\u00a0July 15th 2016!<\/p>\n<h2><strong>Who should apply?<\/strong><\/h2>\n<p>Staff scientists,\u00a0graduate students, post-docs and faculty, who work in the context of Bioimaging facilities and provide assistance to users in need of Bioimage Data Analysis. We expect some experience in handling image data, and a good level of familiarity with imageJ\/FIJI; this course is not appropriate for\u00a0complete beginners! (in 2017 NEUBIAS will offer more NEUBIAS\u00a0Training Schools including one for \u201cEarly Career Investigators\u201d) Very basic programming knowledge is a plus, but not a requirement.<\/p>\n<p>Interested applicants should prepare\u00a0a letter of motivation (max 2000 char.!), provide contact information and fill a form to\u00a0assess their level of proficiency and interests; applicants are also encouraged to provide details about a mini-project that they wish to bring to the course\u00a0(e.g. a specific image analysis tool or workflow that they are interested in getting help with, from our expert trainers).<\/p>\n<ul>\n<li><strong>Number of Available Seats for Trainees:\u00a0 25<\/strong><\/li>\n<li><strong>Number of available Trainers to assist them: 11<\/strong><\/li>\n<\/ul>\n<p>If you are an early career investigator and have no experience\u00a0with image processing or\u00a0analysis, NEUBIAS will organize the first training school for Early Career Investigators (at the Gulbenkian Institute, Portugal, 12-15 Feb 2017) dedicated to Life Scientists that aim at diving into BioImage Analysis.<\/p>\n<p>If you already master BioImage Analysis tools and feel you have a solid understanding of workflows and programming, NEUBIAS will also organize an advanced course for Analysts, focused on developing advanced workflows and applications, and delivered by developers and confirmed analysts (at Gulbenkian Institute, Oeiras &#8211; Portugal, 12-15 February 2017).<\/p>\n<h2><strong>Requirements?<\/strong><\/h2>\n<ul>\n<li>Must be able to attend all days\/times of the course (no exceptions!)<\/li>\n<li><strong>Must fill valid application form by July 15th (2016).<\/strong><\/li>\n<li>Must comply to administrative conditions and send confirmation of travel arrangements BEFORE JULY 31st (2016) after confirmation of selection on July 18th (2016)<\/li>\n<\/ul>\n<h2><strong>Travel Grants<br \/>\n<\/strong><\/h2>\n<p>NEUBIAS will offer <strong>competitive Travel Grants to a number of the Trainees applicants, <\/strong>affiliated to institutions in COST member countries, Near-Neighbour Countries or approved European RTD Organisations (check definitions in Vademecum <a href=\"http:\/\/www.cost.eu\/Vademecum\">here<\/a>). Please check in the application form how to apply for those grants by filling the additional fields enabling to submit a justification. The grants are supported by COST (funding body of the NEUBIAS Action). Eligibility and reimbursement modalities will follow the criteria\/general COST policies (check the Vademecum <a href=\"http:\/\/www.cost.eu\/Vademecum\">here<\/a>).<\/p>\n<p>Granted trainees will be notified by July 18th, 2016, and grants will be executed after the Training School (daily signature on attendance sheets compulsory for grant winners).<\/p>\n<p>The grant amounts to about 920 euros in concept of travel and accommodation for this 4-days (i.e. 5 nights) Training School, to be reimbursed upon acceptance and after participation, according to COST rules (check the Vademecum <a href=\"http:\/\/www.cost.eu\/Vademecum\">here<\/a>).<\/p>\n<h2><strong>What is Included<br \/>\n<\/strong><\/h2>\n<p>COST supports Local organizers with a financial contribution and supports Trainers. Lunch and coffee breaks will be included for all participants. The course material will be delivered electronically and on pen-drives.<\/p>\n<p>Complementary expenses, not covered by eligible expenses supported by COST, will be incurred to the participants. Check the application form for more details.<\/p>\n<h2><strong>Selection Criteria (for all, including granted Trainees)<br \/>\n<\/strong><\/h2>\n<p>Trainees will be selected strictly on the basis of their scientific motivations, as described in their motivation letter. Gender balance and geographical distribution will be taken into consideration according to COST policies, and only after pre-selection of eligible\/suitable candidates and in the case that applicants are too numerous as compared to the number of available seats.<\/p>\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>NEUBIAS Training School for Facility Staffs: Barcelona, \u00a0Sept 13 &#8211; 16, 2016 Topics addressed: BioImage analysis and programming foundations ImageJ macro language;\u00a0Macro recorder, editor &amp; macro language; variables &amp; strings;user-defined functions;\u00a0loops &amp;\u00a0conditional execution;\u00a0batch processing and automation Filtering, segmentation, post-processing &amp;\u00a0measurement Matlab basics; import, processing and basic\u00a0analysis; Matlab programming Applications Cell nuclei segmentation 3D Colocalization analysis 3D tubular network analysis of blood vessels Directionality analysis of EB1 movement along microtubules 3D data visualization and registration &#8220;Present [&hellip;]<\/p>\n","protected":false},"author":4,"featured_media":0,"parent":7,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v20.6 - 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