{"id":2397,"date":"2017-05-09T09:04:15","date_gmt":"2017-05-09T08:04:15","guid":{"rendered":"http:\/\/eubias.org\/NEUBIAS\/?page_id=2397"},"modified":"2017-10-05T13:50:07","modified_gmt":"2017-10-05T12:50:07","slug":"new-3-gothenburg-sweden","status":"publish","type":"page","link":"https:\/\/eubias.org\/NEUBIAS\/what-is-taggathon\/new-3-gothenburg-sweden\/","title":{"rendered":"#3 @Gothenburg (Sweden)"},"content":{"rendered":"<div id=\"pl-2397\"  class=\"panel-layout\" ><div id=\"pg-2397-0\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-2397-0-0\"  class=\"panel-grid-cell\" ><div id=\"panel-2397-0-0-0\" class=\"so-panel widget widget_media_image panel-first-child panel-last-child\" data-index=\"0\" ><img width=\"169\" height=\"300\" src=\"https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_164259908-169x300.jpg\" class=\"image wp-image-3527  attachment-medium size-medium\" alt=\"\" style=\"max-width: 100%; height: auto;\" srcset=\"https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_164259908-169x300.jpg 169w, https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_164259908-768x1365.jpg 768w, https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_164259908-576x1024.jpg 576w\" sizes=\"(max-width: 169px) 100vw, 169px\" \/><\/div><\/div><div id=\"pgc-2397-0-1\"  class=\"panel-grid-cell\" ><div id=\"panel-2397-0-1-0\" class=\"so-panel widget widget_media_image panel-first-child panel-last-child\" data-index=\"1\" ><img width=\"169\" height=\"300\" src=\"https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_163657644-169x300.jpg\" class=\"image wp-image-3534  attachment-medium size-medium\" alt=\"\" style=\"max-width: 100%; height: auto;\" srcset=\"https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_163657644-169x300.jpg 169w, https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_163657644-768x1365.jpg 768w, https:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_163657644-576x1024.jpg 576w\" sizes=\"(max-width: 169px) 100vw, 169px\" \/><\/div><\/div><div id=\"pgc-2397-0-2\"  class=\"panel-grid-cell\" ><div id=\"panel-2397-0-2-0\" class=\"so-panel widget widget_media_image panel-first-child panel-last-child\" data-index=\"2\" ><img class=\"image \" src=\"http:\/\/eubias.org\/NEUBIAS\/wp-content\/uploads\/2017\/10\/IMG_20170913_165105408-169x300.jpg\" alt=\"\" width=\"2340\" height=\"4160\" \/><\/div><\/div><\/div><div id=\"pg-2397-1\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-2397-1-0\"  class=\"panel-grid-cell\" ><div id=\"panel-2397-1-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child panel-last-child\" data-index=\"3\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<p>The 3rd Taggathon (Taggathon#3) have been hosted and organized by the <a class=\"\" href=\"http:\/\/cf.gu.se\/english\/Centre_for_Cellular_Imaging\" target=\"_blank\" rel=\"noopener noreferrer\">Centre for Cellular Imaging<\/a>, Sahlgrenska Academy, at the University of Gothenburg, Sweden,<strong> from\u00a0 September 11 th (3pm) to 14 th of September (3pm)<\/strong>.<\/p>\n<p>The general purpose of <a href=\"https:\/\/eubias.org\/NEUBIAS\/what-is-taggathon\/\" target=\"_blank\" rel=\"noopener noreferrer\">taggathons<\/a> is to implement and feed the content of\u00a0<a href=\"http:\/\/biii.eu\" target=\"_blank\" rel=\"noopener noreferrer\">NEUBIAS webtool<\/a>. This webtool aims to provide an organized repository of bio image analysis software and workflows\u00a0to biologists, bioimage analysts and algorithm developers. During the <a href=\"http:\/\/eubias.org\/NEUBIAS\/what-is-taggathon\/schedule-taggathon-1-upf-barcelona\/\" target=\"_blank\" rel=\"noopener noreferrer\">first taggathon<\/a>\u00a0(Barcelona), a list of feature specifications has been ranked by importance, and potential web technologies reviewed and evaluated against these specifications.\u00a0 During the <a href=\"http:\/\/eubias.org\/NEUBIAS\/what-is-taggathon\/taggathon-2-gulbenkian-oeiras\/\">second taggathon<\/a>, (Oeiras), new data models, both for the organization of the webtool content and the\u00a0<a href=\"https:\/\/bioportal.bioontology.org\/ontologies\/EDAM-BIOIMAGING\" target=\"_blank\" rel=\"noopener noreferrer\">tags ontology<\/a>, have been discussed in collaboration with <a href=\"https:\/\/eubias.org\/NEUBIAS\/venue\/neubias\/benchmarking-sample-datasets-wg5\/\">NEUBIAS WG5<\/a>,\u00a0<a href=\"http:\/\/www.eurobioimaging.eu\/sites\/default\/files\/EuBI%20PPII_D6.2_IRP.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">Eurobioimaging<\/a>\u00a0and\u00a0<a href=\"https:\/\/bio.tools\/\" target=\"_blank\" rel=\"noopener noreferrer\">Elixir<\/a>, and have been implemented in the webtool. Content of the first prototype is now beein reimported in the new webtool and will need some curation in this next taggathon.<\/p>\n<p>During Taggathon#3, the following task were performed:<\/p>\n<ul>\n<li>Curate the content of the <a href=\"http:\/\/biii.eu\">new webtool<\/a><\/li>\n<li>Identify and tag more tools<\/li>\n<li>Implement synonymous terms between Biology and Image Analysis<\/li>\n<li>Refine and curate <a href=\"https:\/\/bioportal.bioontology.org\/ontologies\/EDAM-BIOIMAGING\">EDAM bioimaging<\/a> (definitions and synonyms)<\/li>\n<li>Discuss extensively the next milestones including <a href=\"https:\/\/area51.stackexchange.com\/proposals\/110225\/bioimage-analysis?referrer=C0OEcxN3xaPnq75stgSYwg2\">forum set up<\/a>, and define the use of webtool as a teaching tool.<\/li>\n<li>Demonstrate and build complex queries based on semantic web, and expose data to other projects.<\/li>\n<li>Implement prototype of Benchmarking-Webtool interaction with WG5.<\/li>\n<\/ul>\n<p>Taggathon#3 was hold in parallel of Training Schools TS4 and TS5 and at the same location.<\/p>\n<p>\u00a0<\/p>\n<\/div>\n<\/div><\/div><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>The 3rd Taggathon (Taggathon#3) have been hosted and organized by the Centre for Cellular Imaging, Sahlgrenska Academy, at the University of Gothenburg, Sweden, from\u00a0 September 11 th (3pm) to 14 th of September (3pm). The general purpose of taggathons is to implement and feed the content of\u00a0NEUBIAS webtool. This webtool aims to provide an organized repository of bio image analysis software and workflows\u00a0to biologists, bioimage analysts and algorithm developers. During the first taggathon\u00a0(Barcelona), a list [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":226,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v20.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>#3 @Gothenburg (Sweden) - NEUBIAS: Network of BioImage Analysts<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/eubias.org\/NEUBIAS\/what-is-taggathon\/new-3-gothenburg-sweden\/\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/eubias.org\/NEUBIAS\/what-is-taggathon\/new-3-gothenburg-sweden\/\",\"url\":\"https:\/\/eubias.org\/NEUBIAS\/what-is-taggathon\/new-3-gothenburg-sweden\/\",\"name\":\"#3 @Gothenburg (Sweden) - 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