{"id":6031,"date":"2018-11-20T14:14:42","date_gmt":"2018-11-20T13:14:42","guid":{"rendered":"http:\/\/eubias.org\/NEUBIAS\/?page_id=6031"},"modified":"2018-11-20T14:15:48","modified_gmt":"2018-11-20T13:15:48","slug":"luxembourg-2019-program-luxembourg-2019-satelliteworkshop","status":"publish","type":"page","link":"https:\/\/eubias.org\/NEUBIAS\/neubias2020-conference\/luxembourg-2019\/program-luxembourg-2019\/luxembourg-2019-program-luxembourg-2019-satelliteworkshop\/","title":{"rendered":"Satellite Workshop – Luxembourg Feb 5th 2019"},"content":{"rendered":"

NEW!<\/span> NEUBIAS Satellite meeting: Bioimage Analysts\u2019 best practices seminar<\/h3>\n

During this meeting, advanced image analysis workflows and infrastructures will be presented by experienced Bioimage Analysts. The primary goal of the session is communication among experts fostering knowledge exchange. We will show and discuss image analysis components, workflows and tools that are technically advanced and yet have clear potential to work on a routine basis. However, the workflows and infrastructures might have bottlenecks and even breaks. Thus, the session serves as a forum for expert-to-expert discussions on what tools and workflows can be applied in the daily business of bioimage analysts.<\/p>\n

Compared to a teaching session (from experts to students) the presentations (given from expert to expert) may also point to bottlenecks in the workflows or parts which don\u2019t work sufficiently. This fosters discussion, knowledge exchange and potentially further development.<\/p>\n

What distinguishes this session from an abstract submission is that the presenters are not expected to present recent developments, but established advanced tools and their usage. These tools could even be developed by other people.<\/p>\n

Venue<\/h3>\n

Neumuenster Abbey, same location as for the Symposium<\/p>\n

Participation<\/h3>\n

Free for Symposium participants with mandatory registration. Coffee included.<\/p>\n

Free for Training School #11 trainees and trainers.<\/p>\n

Schedule<\/h3>\n

15:00 – 16:30\u00a0\u00a0\u00a0\u00a0 N-D batch image analysis<\/strong><\/span>
\nIntroduction, Christian Tischer<\/strong> (EMBL, Heidelberg)
\nFiji,\u00a0 Robert Haase<\/strong> (MPI-CBG, Dresden)
\nCellProfiler,\u00a0 Hugo Botelho<\/strong> (BioISI, Lisbon)
\nKNIME,\u00a0 Jan Eglinger<\/strong> (FMI, Basel)
\nDiscussion<\/p>\n

16:30 – 17:00 Coffee break<\/p>\n

17:00 – 18:30\u00a0\u00a0\u00a0\u00a0 Computational infrastructures<\/strong><\/span>
\nIntroduction, Robert Haase<\/strong> (MPI-CBG, Dresden)
\nVirtualized analysis workstations,\u00a0 Niko Ehrenfeuchter<\/strong> (Biozentrum, Basel)
\nSlurm cluster,\u00a0\u00a0 Christian Tischer<\/strong> (EMBL, Heidelberg)
\nHIVE,\u00a0\u00a0 Olaf Selchow<\/strong> (Microscopy & BioImaging Professional, Gera)
\nDiscussion<\/p>\n

Free evening (no event)<\/p>\n

Session Organisers<\/h3>\n

Christian Tischer (EMBL, Heidelberg)
\nRobert Haase (MPI CBG, Dresden)
\nSebastian Munck (VIB-KU Leuven)<\/p>\n","protected":false},"excerpt":{"rendered":"

NEW! NEUBIAS Satellite meeting: Bioimage Analysts\u2019 best practices seminar During this meeting, advanced image analysis workflows and infrastructures will be presented by experienced Bioimage Analysts. The primary goal of the session is communication among experts fostering knowledge exchange. We will show and discuss image analysis components, workflows and tools that are technically advanced and yet have clear potential to work on a routine basis. However, the workflows and infrastructures might have bottlenecks and even breaks. […]<\/p>\n","protected":false},"author":8,"featured_media":0,"parent":4601,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"yoast_head":"\nSatellite Workshop - Luxembourg Feb 5th 2019 - NEUBIAS: Network of BioImage Analysts<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/eubias.org\/NEUBIAS\/neubias2020-conference\/luxembourg-2019\/program-luxembourg-2019\/luxembourg-2019-program-luxembourg-2019-satelliteworkshop\/\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/eubias.org\/NEUBIAS\/neubias2020-conference\/luxembourg-2019\/program-luxembourg-2019\/luxembourg-2019-program-luxembourg-2019-satelliteworkshop\/\",\"url\":\"https:\/\/eubias.org\/NEUBIAS\/neubias2020-conference\/luxembourg-2019\/program-luxembourg-2019\/luxembourg-2019-program-luxembourg-2019-satelliteworkshop\/\",\"name\":\"Satellite Workshop - 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