{"id":8831,"date":"2022-07-13T14:01:09","date_gmt":"2022-07-13T13:01:09","guid":{"rendered":"http:\/\/eubias.org\/NEUBIAS\/?page_id=8831"},"modified":"2023-02-21T00:02:57","modified_gmt":"2023-02-20T23:02:57","slug":"defragmentation-training-school-2022","status":"publish","type":"page","link":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/","title":{"rendered":"Defragmentation Training School 2022"},"content":{"rendered":"

\"\"<\/a><\/p>\n

Defragmentation Training School – NEUBIAS Academy & EOSC-Life<\/a> 2022<\/h1>\n

A training school for the new generation of bioimage analysts.<\/p>\n

Topics: workflow-based image analysis and new integrated methods for cloud computing applied to life sciences.<\/p>\n

“Defragmentation: bringing BioImage Analysts to the cloud!\u201d<\/h3>\n

Registration form:<\/h4>\n

https:\/\/docs.google.com\/forms\/d\/e\/1FAIpQLSeyiFfdfRYAcQQB73dGy7WuclvkB_RiKxHncAd_HGwN_geFgA\/viewform<\/a><\/p>\n

Registration deadline extended to 28 August 2022<\/span><\/h4>\n

Programme:<\/h4>\n\n\n\n\n\n\n\n\n\n
Date<\/th>\nDay<\/th>\nTopics<\/th>\nSessions<\/th>\n<\/tr>\n<\/thead>\n
23 September<\/td>\nDay 1<\/td>\nIntroduction to bioimage analysis, tools, and workflows<\/b><\/td>\n\u201cBioImage: correlated multimodal imaging in life sciences and the problem of big data management for core facilities\u201d
\nJulia Fernandez-Rodriguez<\/b><\/p>\n

\u201cIntroduction to what is bioimage analysis\u201d
\nKota Miura<\/b><\/p>\n

\u201cImage Data Services at Euro-BioImaging: Community efforts towards FAIR Image Data and Analysis Services\u201d
\nAastha Mathur<\/b><\/p>\n

\u201cJupyter for interactive cloud computing\u201d
\nGuillaume Witz<\/b><\/p>\n

\u201cJupyter exercises\u201d
\nGuillaume Witz<\/b><\/td>\n<\/tr>\n

30 September<\/td>\nDay 2<\/td>\nFAIR principles<\/b><\/p>\n

Cloud hosted image data and cloud infrastructures<\/b><\/p>\n

Machine and Deep Learning on the cloud I<\/b><\/p>\n

Machine and Deep Learning on the cloud II<\/b><\/td>\n

\u201cIntroduction to FAIR principles for computational workflows\u201d
\nCarole Goble<\/b><\/p>\n

\u201cCloud hosted image data storage, visualisation and sharing\u201d
\nChristian Tischer<\/b><\/p>\n

\u201cMachine and Deep Learning on the cloud: Classification\u201d
\nDavid Rousseau<\/b><\/p>\n

\u201cMachine and Deep Learning on the cloud: Segmentation\u201d
\nIgnacio Arganda-Carreras<\/b><\/td>\n<\/tr>\n

7 October<\/td>\nDay 3<\/td>\nExamples of bioimage analysis workflows<\/b><\/td>\n\u201cZero code tools for bioimage analysis\u201d
\nDaniel Sage<\/b><\/p>\n

\u201cCellProfiler for HCS data on the cloud\u201d
\nBeth Cimini and Anna Klemm<\/b><\/p>\n

\u201cAnalysis of Microtubule Orientation\u201d
\nThomas Pengo<\/b><\/td>\n<\/tr>\n

14 October<\/td>\nDay 4<\/td>\nParallelization: from CPU to GPU – how to speed up workflows<\/b><\/p>\n

Work on your own data<\/b><\/td>\n

\u201cParallelization and heterogeneous computing: from pure CPU to GPU-accelerated image processing\u201d
\nRobert Haase<\/b><\/p>\n

\u201cIntroduction to Galaxy workflow environment\u201d
\nBeatriz Serrano-Solano and Bj\u00f6rn Gr\u00fcning<\/b><\/p>\n

Trainees will be split into groups and they will start working on the selected workflows to convert them into a cloud solution<\/td>\n<\/tr>\n

21 October<\/td>\nDay 5<\/td>\nBenchmarking theory<\/b><\/p>\n

Benchmarking tools<\/b><\/p>\n

Work on your own data<\/b><\/td>\n

\u201cMetrics and Benchmarking\u201d
\nMichal Kozubek<\/b><\/p>\n

\u201cBIAFLOWS: A BioImage Analysis workflows benchmarking platform\u201d
\nSe\u0301bastien Tosi, Volker Baecker and Benjamin Pavie
\n<\/b><\/p>\n

Trainees will present their cloud workflows<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Scientific Organizers: Rocco D’Antuono, Paula Sampaio, Mafalda Sousa, Clara Prats, Marion Loveaux<\/b>.
\nScientific Advisory Board: Julien Colombelli, Paula Sampaio, Julia Fernandez-Rodriguez, Gaby Martins<\/b>.<\/p>\n

Event Timing: Training school distributed over 5 CEST Friday afternoon classes on September 23rd and 30th – October 7th, 14th, and 21st.<\/p>\n

Event type: Online.<\/p>\n

Capacity: max 25 participants.<\/p>\n

Participation fee: Euro 100 (to be paid after admission).<\/p>\n

Registration form: https:\/\/docs.google.com\/forms\/d\/e\/1FAIpQLSeyiFfdfRYAcQQB73dGy7WuclvkB_RiKxHncAd_HGwN_geFgA\/viewform<\/a><\/p>\n

Registration deadline: 28 August 2022<\/strong><\/span><\/p>\n

Contacts: rocco.dantuono@crick.ac.uk<\/a>
\nPlease use the following subject: Defragmentation TS<\/p>\n

<\/div>\n","protected":false},"excerpt":{"rendered":"

Defragmentation Training School – NEUBIAS Academy & EOSC-Life 2022 A training school for the new generation of bioimage analysts. Topics: workflow-based image analysis and new integrated methods for cloud computing applied to life sciences. “Defragmentation: bringing BioImage Analysts to the cloud!\u201d Registration form: https:\/\/docs.google.com\/forms\/d\/e\/1FAIpQLSeyiFfdfRYAcQQB73dGy7WuclvkB_RiKxHncAd_HGwN_geFgA\/viewform Registration deadline extended to 28 August 2022 Programme: Date Day Topics Sessions 23 September Day 1 Introduction to bioimage analysis, tools, and workflows \u201cBioImage: correlated multimodal imaging in life sciences and […]<\/p>\n","protected":false},"author":11,"featured_media":0,"parent":7534,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"yoast_head":"\nDefragmentation Training School 2022 - NEUBIAS: Network of BioImage Analysts<\/title>\n<meta name=\"description\" content=\"Defragmentation: bringing BioImage Analysts to the cloud! Training School for the new generation of bioimage analysts.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/\",\"url\":\"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/\",\"name\":\"Defragmentation Training School 2022 - NEUBIAS: Network of BioImage Analysts\",\"isPartOf\":{\"@id\":\"https:\/\/eubias.org\/NEUBIAS\/#website\"},\"datePublished\":\"2022-07-13T13:01:09+00:00\",\"dateModified\":\"2023-02-20T23:02:57+00:00\",\"description\":\"Defragmentation: bringing BioImage Analysts to the cloud! Training School for the new generation of bioimage analysts.\",\"breadcrumb\":{\"@id\":\"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Accueil\",\"item\":\"https:\/\/eubias.org\/NEUBIAS\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Training\",\"item\":\"https:\/\/eubias.org\/NEUBIAS\/training-schools\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"NEUBIAS Academy\",\"item\":\"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/\"},{\"@type\":\"ListItem\",\"position\":4,\"name\":\"Defragmentation Training School 2022\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/eubias.org\/NEUBIAS\/#website\",\"url\":\"https:\/\/eubias.org\/NEUBIAS\/\",\"name\":\"NEUBIAS: Network of BioImage Analysts\",\"description\":\"The Network of European BioImage Analysts to advance life science imaging\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/eubias.org\/NEUBIAS\/?s={search_term_string}\"},\"query-input\":\"required name=search_term_string\"}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Defragmentation Training School 2022 - NEUBIAS: Network of BioImage Analysts","description":"Defragmentation: bringing BioImage Analysts to the cloud! Training School for the new generation of bioimage analysts.","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/","twitter_misc":{"Est. reading time":"2 minutes"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/","url":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/","name":"Defragmentation Training School 2022 - NEUBIAS: Network of BioImage Analysts","isPartOf":{"@id":"https:\/\/eubias.org\/NEUBIAS\/#website"},"datePublished":"2022-07-13T13:01:09+00:00","dateModified":"2023-02-20T23:02:57+00:00","description":"Defragmentation: bringing BioImage Analysts to the cloud! Training School for the new generation of bioimage analysts.","breadcrumb":{"@id":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/defragmentation-training-school-2022\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Accueil","item":"https:\/\/eubias.org\/NEUBIAS\/"},{"@type":"ListItem","position":2,"name":"Training","item":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/"},{"@type":"ListItem","position":3,"name":"NEUBIAS Academy","item":"https:\/\/eubias.org\/NEUBIAS\/training-schools\/neubias-academy-home\/"},{"@type":"ListItem","position":4,"name":"Defragmentation Training School 2022"}]},{"@type":"WebSite","@id":"https:\/\/eubias.org\/NEUBIAS\/#website","url":"https:\/\/eubias.org\/NEUBIAS\/","name":"NEUBIAS: Network of BioImage Analysts","description":"The Network of European BioImage Analysts to advance life science imaging","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/eubias.org\/NEUBIAS\/?s={search_term_string}"},"query-input":"required name=search_term_string"}],"inLanguage":"en-US"}]}},"_links":{"self":[{"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/pages\/8831"}],"collection":[{"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/users\/11"}],"replies":[{"embeddable":true,"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/comments?post=8831"}],"version-history":[{"count":3,"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/pages\/8831\/revisions"}],"predecessor-version":[{"id":8920,"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/pages\/8831\/revisions\/8920"}],"up":[{"embeddable":true,"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/pages\/7534"}],"wp:attachment":[{"href":"https:\/\/eubias.org\/NEUBIAS\/wp-json\/wp\/v2\/media?parent=8831"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}