{"id":927,"date":"2016-08-17T14:32:17","date_gmt":"2016-08-17T13:32:17","guid":{"rendered":"http:\/\/eubias.org\/NEUBIAS\/?page_id=927"},"modified":"2017-02-01T11:34:48","modified_gmt":"2017-02-01T10:34:48","slug":"programme","status":"publish","type":"page","link":"https:\/\/eubias.org\/NEUBIAS\/neubias2020-conference\/symposium2017-lisbon\/symposium-lisbon-15-17-feb\/programme\/","title":{"rendered":"Scientific programme"},"content":{"rendered":"
\n\t\t\t\n\t\t\n\t\t\t\n\t\t\tBack to Symposium\t\t<\/span>\n\t\t\t<\/a>\n\t<\/div>\n<\/div><\/div><\/div><\/div>
\n
\n\t

\u00a0\u00a0\u00a0\u00a0 Scientific Programme<\/h1>\n

\u00a0<\/p>\n

Confirmed Keynote speakers<\/h2>\n

Anne Carpenter<\/a> -\u00a0 Broad Institute of MIT and Harvard, Boston - USA<\/strong><\/p>\n

Fred Hamprecht<\/a> - University of Heidelberg, Germany<\/strong><\/p>\n

Christophe Zimmer<\/a> -\u00a0Institut Pasteur, Paris - France
<\/strong><\/p>\n

Confirmed Invited speakers<\/h2>\n

Anatole Chessel<\/a> - \u00c9cole Polytechnique, Palaiseau (Paris) - France<\/strong><\/p>\n

Lucy Collinson<\/a> - The Francis Crick Institute, London - UK<\/strong><\/p>\n

Alexandre Dufour<\/a> - Institut Pasteur, Paris - France<\/strong><\/p>\n

Martin Horn<\/a> - Univeristy of Konstanz, Germany<\/strong><\/p>\n

Florian Jug<\/a> - Max Plank Institute for Cell Biology & Genetics, Dresden - Germany<\/strong><\/p>\n

Michal Kozubek<\/a>\u00a0-\u00a0Masaryk University, Brno - Czech Republic<\/strong><\/p>\n

Nadine Peyri\u00e9ras<\/a><\/strong> - CNRS - Institut de Neurobiologie Alfred Fessard, Gif s\/Y. - France<\/strong><\/p>\n

Stephan Preibisch<\/a>\u00a0-\u00a0Berlin Institute of Medical Systems Biology, Germany<\/strong><\/p>\n

Anne-Lise Routier-Kierzkowka<\/a>\u00a0 MPI for Plant Breeding Research, Cologn - Germany<\/strong><\/p>\n

Curtis Rueden<\/a> - LOCI, University of Wisconsin, Madison - USA<\/strong><\/p>\n

Daniel Sage<\/a> - Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL) - Switzerland<\/strong><\/p>\n

Jean-Baptiste Sibarita<\/a> - Interdisciplinary Instittue for Neuroscience (IINS), Bordeaux - France<\/strong><\/p>\n

Pavel Tomancak<\/a>\u00a0- Max Plank Institute for Cell Biology & Genetics, Dresden - Germany<\/strong><\/p>\n

\u00a0<\/p>\n

\u00a0<\/p>\n

Provisional Schedule (Table)<\/h2>\n

(more information coming and changes still expected)<\/span><\/p>\n

\u00a0<\/p>\n<\/div>\n<\/div><\/div>

<\/div>
<\/th><\/th><\/th><\/th><\/tr><\/thead>
Wednesday 15th February <\/td><\/td><\/td><\/td><\/tr>
15h <\/td>Registration <\/td>Coffee, Set up Posters <\/td><\/td><\/tr>
16h <\/td>Welcome <\/td>Welcome <\/td><\/td><\/tr>
16h10 <\/td>Keynote <\/td> Anne Carpenter - Broad Institute, Boston <\/td>[Invited] \"Information in images: Targeting diseases & characterizing compounds via CellProfiler and Cell Painting\" <\/td><\/tr>
17h <\/td>Flash Talks (of posters) <\/td>Perrine Paul-Gilloteaux <\/td>eC-CLEM: Flexible multidimensional registration software for correlative microscopies with refined accuracy mapping <\/td><\/tr>
<\/td><\/td>Jose Miguel Serra Lleti <\/td>Developing a software tool for multiple targeting and automated acquisition in correlative light-electron microscopy. <\/td><\/tr>
<\/td><\/td>Christian Tischer <\/td>ImageJ Plugins for Efficient Streaming, Tracking and Adaptive Cropping of TeraByte-sized Data Sets <\/td><\/tr>
<\/td><\/td>Marlies Verschuuren <\/td>Deep coverage image analysis of morphofunctional connectivity in neuronal networks <\/td><\/tr>
<\/td><\/td>Marta Alabrudzinska <\/td>Intravital imaging and 4D quantification of tumor growth and the tumor vasculature <\/td><\/tr>
<\/td><\/td>Lassi Paavolainen <\/td>Image-based phenotypic profiling of patient-derived cancer cells <\/td><\/tr>
<\/td><\/td>Winnok De Vos <\/td>Cellular Redox Profiling Using Deep Coverage Microscopy <\/td><\/tr>
<\/td><\/td>Hugo Botelho <\/td>Modular high content image analysis workflows leveraging biology and biomedicine <\/td><\/tr>
<\/td><\/td>Emilio Gualda <\/td>Beyond 3D imaging: virtual reality & colour 3D printing of microscopy 3D <\/td><\/tr>
<\/td><\/td>Chong Zhang\/Carlos Yag\u00fce <\/td>The Rocket App: a \" exible, modular, Cloud-based platform for the management of heterogeneous data\/information from multiple acquisition\/tools for biomedical and clinical research <\/td><\/tr>
17h30 - 19h30 - Open ended <\/td>Hands On Demos \/ Workshops <\/td>Companies to explain and demo their latest developments in Analysis and IT solutions, Talks and\/or Booth format. Confirmed exhibitors: GE Healthcare, Arivis <\/td>Confirmed exhibitors: GE Healthcare, Arivis, Carl Zeiss <\/td><\/tr>
<\/td><\/td><\/td><\/td><\/tr>
19h15 -21h <\/td>OSS Lounge: Open Source Software & -Tools Forum <\/td>Experts and\/or developers available to demo the latest updates and functionalities of a broad selection of Open Software tools. Booth\/digital poster format <\/td>Confirmed OSS\/tools represented: IJ\/IJ2\/Fiji, CellProfiler, Icy, ilastik, KNIME, MorphoDynaMX, SR-Tesseler, CATMAID-ONTO, Cytomine, OpenImadis, Bioemergences web platform, SuRVos, and more... <\/td><\/tr>
<\/td><\/td><\/td><\/td><\/tr>
21h <\/td>Free Evening <\/td><\/td>Free Evening <\/td><\/tr>
Thursday 16th February <\/td><\/td><\/td><\/td><\/tr>
9h00 <\/td>Keynote <\/td>Fred Hamprecht - University of Heidelberg <\/td> [Invited] \"Shallow and Deep Learning for Bioimage Analysis\" <\/td><\/tr>
9h50 <\/td>NEUBIAS <\/td>State of Affairs of the Community <\/td>Reports on the progress and Deliverables of NEUBIAS, e.g. Events, Webtools development, Career Path, Open Publications, Outreach, Strategy and Future <\/td><\/tr>
10h40 <\/td>Coffee <\/td>Coffee <\/td><\/td><\/tr>
11h10 <\/td>Session 1 <\/td><\/td><\/td><\/tr>
<\/td>Session 1 <\/td>Anne-Lise Routier-Kierzkowska <\/td>[Invited] \"MorphoDynamX: from 4D image analysis to computational modeling\" <\/td><\/tr>
<\/td><\/td>Daniel Sage <\/td>[Invited] \"Computational methods for high resolution 3D fluorescence microscopy\" <\/td><\/tr>
<\/td><\/td>Nadine Peyri\u00e9ras <\/td>[Invited] \"From 3D+time imaging data to digital and virtual specimens\" <\/td><\/tr>
<\/td><\/td>Jean-Baptiste Sibarita <\/td>[Invited] \"Toward quantitative multicolor single-molecule localization microscopy\" <\/td><\/tr>
12h30 <\/td>Lunch <\/td>... and Posters <\/td>Posters - Part I <\/td><\/tr>
<\/td>or <\/td>MC meeting <\/td>On invitation (with lunch...) <\/td><\/tr>
14h15 <\/td>NEUBIAS <\/td>\"Call For Help\" \/ \"Shout Your Problem\" \/ \"Analysis Clinics\" <\/td>Interactive Session: Life Scientists and Bioimage Analysts facing Image Analysis Roadblocks in their research projects can submit their problem and developers \/ Analysts will address them, build and benchmark Solutions <\/td><\/tr>
15h50 <\/td>Session 2 <\/td>Session 2 <\/td><\/td><\/tr>
<\/td><\/td>Michal Kozubek <\/td>[Invited] \"Virtual Cell Imaging: Synthetic Image Datasets for Benchmarking Bioimage Analysis Methods\" <\/td><\/tr>
<\/td><\/td>Pavel Tomancak <\/td>[Invited] \"CATMAID-ONTO: Ontology-based online analysis of large image datasets\" <\/td><\/tr>
<\/td><\/td>Manuel Sch\u00f6lling <\/td>\"How to make Image Segmentation with Deep Learning available for Everyone\" <\/td><\/tr>
<\/td><\/td>Nicolas Chiaruttini <\/td>\"Lipid membranes and surface reconstruction - a biologically inspired method for 3D segmentation\" <\/td><\/tr>
17h <\/td>Coffee <\/td><\/td><\/td><\/tr>
17h30 <\/td>Session 3 <\/td><\/td><\/td><\/tr>
<\/td>Session 3 <\/td>Florian Jug <\/td>[invited] \"Big Data and 3D Visualization\" <\/td><\/tr>
<\/td><\/td>John Bogovic <\/td>\"Much Better Stitching\" <\/td><\/tr>
<\/td><\/td>Hugo Pereira <\/td>\"OPenT - simplified acquisition and processing of optical tomography datasets\" <\/td><\/tr>
18h20 <\/td>Session 4 <\/td>Open Software Showcase <\/td><\/td><\/tr>
<\/td>Session 4 <\/td>Curtis Rueden <\/td>[Invited] \"What's New in ImageJ2 ? \" <\/td><\/tr>
<\/td><\/td>Martin Horn <\/td>[Invited] \"Image Analysis with KNIME\" <\/td><\/tr>
<\/td><\/td>Alexandre Dufour <\/td>[Invited] \"Icy: the next-generation open bio-imaging platform\" <\/td><\/tr>
<\/td><\/td>Rapha\u00ebl Mar\u00e9e <\/td>\"Collaborative analysis of multi-gigapixel imaging data using Cytomine\" <\/td><\/tr>
19h40 <\/td>Drinks <\/td>... and Posters <\/td>Posters - Part II <\/td><\/tr>
20h45 <\/td>Departure for Dinner <\/td>included for all <\/td>Outside Venue (TBA) <\/td><\/tr>
Friday 17th February <\/td><\/td><\/td><\/td><\/tr>
9h00 <\/td>Keynote <\/td>Christophe Zimmer - Institut Pasteur <\/td>[Invited] \"Expanding single molecule localization microscopy in 3D and time\" <\/td><\/tr>
9h50 <\/td>NEUBIAS <\/td>STSM Reports <\/td>3x10' talks, experience and report of Short Term Scientific Missions funded by NEUBIAS. Confirmed speakers: Laure Plantard, STSM grantee (CFIM, Univ. Copenhagen); Martin Jones, Host Lab (Francis Crick Inst.) <\/td><\/tr>
10h20 <\/td>Coffee <\/td><\/td><\/td><\/tr>
10h50 <\/td><\/td>Session 5 <\/td><\/td><\/tr>
<\/td>Session 5 <\/td>Lucy Collinson <\/td>[Invited] \"Challenges in Image Analysis for 3D Electron Microscopy and Correlative Imaging\" <\/td><\/tr>
<\/td><\/td>Stephan Preibisch <\/td>[Invited] \"Reconstruction of large tiled image acquisitions using ImgLib2 and BigDataViewer\" <\/td><\/tr>
<\/td><\/td>Michele C Darrow <\/td>\"Super-Region Volume Segmentation (SuRVoS) Workbench for Segmentation of Three-Dimensional Cellular Data\" <\/td><\/tr>
<\/td><\/td>Natasa Sladoje <\/td>\"Detection and enhancement of objects in low resolution transmission electron microscopy images for multi-scale imaging and structural analysis\" <\/td><\/tr>
12h00 <\/td>NEUBIAS <\/td>Developers, Analysts, Life Scientists <\/td>Panel discussion: How to improve Bioimage Analysis knowledge exchange within the Bioimaging Ecosystem <\/td><\/tr>
13h00 <\/td>Lunch <\/td><\/td><\/td><\/tr>
13h45 <\/td>Gold Sponsor <\/td>Florian Bossard (GE Healthcare) <\/td>Multiparameter phenotypic pro! ling for predictive toxicity using High Content Analysis <\/td><\/tr>
14h05 <\/td><\/td>Session 6 <\/td><\/td><\/tr>
<\/td>Session 6 <\/td>Anatole Chessel <\/td>[Invited] \"High content microscopy pipelines and algorithms for a systemic study of polarity\" <\/td><\/tr>
<\/td><\/td>Anne Beghin <\/td>When High Content Screening meets super-resolution microscopy <\/td><\/tr>
<\/td><\/td>Josh Moore <\/td>The Image Data Resource: a platform for publishing, integrating and mining imaging-derived biological data at scale <\/td><\/tr>
<\/td><\/td>Tania Perestrelo <\/td>Quantification of Embryonic Stem cell Pluripotency through Image-based Analysis Software <\/td><\/tr>
<\/td><\/td>Aliaksandr Halavatyi <\/td>AutoMicTools package to manage Automated Feedback Microscopy data acquisition and analysis <\/td><\/tr>
<\/td><\/td>Ricardo Henriques <\/td>Democratising live-cell high-speed low-illumination super-resolution microscopy through Super-Resolution Radial Fluctuations <\/td><\/tr>
15h40 <\/td>NEUBIAS <\/td>Life of a BioImage Analyst: Handling multiple data sources & workflows <\/td>Success Stories, guided panel discussions on the role and Career Path of Bioimage Analysts in Life Science <\/td><\/tr>
16h30 <\/td>Closing Remarks - End of the Symposium <\/td><\/td><\/td><\/tr><\/tbody><\/table><\/div>WordPress Data Table Plugin<\/a><\/div><\/div><\/div>
\n
\n\t
\n

Topics for scientific Sessions<\/strong><\/p>\n

Feature Extraction Validation and Modelling<\/span><\/em><\/p>\n

High-Throughput Analysis and Model systems<\/span><\/em><\/p>\n

Storage and Biological Big Data projects<\/span><\/em><\/p>\n

Device Integration, Intelligent Imaging and Imaging of Delicate or Rare Biological Events<\/span><\/em><\/p>\n

Multidimensional datasets and visualization<\/span><\/em><\/p>\n

\u00a0<\/p>\n

\u00a0<\/p>\n<\/div>\n<\/div><\/div>

\n
\n\t

Gala dinner - how to get to the gala dinner restaurant:
\n