{"id":975,"date":"2016-09-28T12:51:50","date_gmt":"2016-09-28T11:51:50","guid":{"rendered":"http:\/\/eubias.org\/NEUBIAS\/?page_id=975"},"modified":"2021-01-12T12:55:32","modified_gmt":"2021-01-12T11:55:32","slug":"past-stsms","status":"publish","type":"page","link":"https:\/\/eubias.org\/NEUBIAS\/mobility-grants\/past-stsms\/","title":{"rendered":"Past STSMs"},"content":{"rendered":"
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Grantee, HOME Institution <\/th><\/th>HOST, Lab & Institution <\/th><\/th>Title <\/th>Dates <\/th><\/tr><\/thead>
Dr. V\u00e9ronique Gebala ** <\/td>Max Delbrueck Center for Molecular Medicine, Berlin (DE) <\/td>Dr. Martin Jones <\/td>The Francis Crick Institute, London (UK) <\/td>Endothelial cell shape regulation by integrin beta 1 during sprouting angiogenesis in vivo <\/td>1 week, 09\/2016 <\/td><\/tr>
Mr Hamid Fehri ** <\/td>University of Sheffield, Sheffield (UK) <\/td>Dr. Erik Meijering <\/td>Erasmus University Medical Center, Biomedical Imaging Group Rotterdam, Rotterdam (NL) <\/td>Segmentation and Interpretation of Cells in Fluorescent Microscopy Images <\/td>2 months, 02-03\/2017 <\/td><\/tr>
Dr. Maria Smedh <\/td>University of Gothenburg, Gothenburg (SE) <\/td>Dr. Rainer Heintzmann <\/td>Leibniz Institute of Photonic Technology (IPHT), Jena (DE) <\/td>Processing and Analysis of SR-SIM and SMLM Super-Resolution Images <\/td>1 week, 11\/2016 <\/td><\/tr>
Dr Devrim Unay <\/td>Izmir University of Economics, Izmir (TR) <\/td>Dr. Stefan G. Stanciu <\/td>University Politehnica of Bucharest, Bucharest (RO) <\/td>Robust detection and description of local invariant features in Laser Scanning Microscopy Data Sets <\/td>1 week, 01\/2017 <\/td><\/tr>
Dr Laure Plantard <\/td>University of Copenhagen, Copenhagen (DK) <\/td>Dr. Simon Noerrelykke <\/td>ScopeM-IDA , ETH-Zurich (CH) <\/td>2D and 3D analysis of fluorescent microscopy images using Imaris, MATLAB, Fiji, and CellProfiler with a focus on combining software packages and automating the analysis of batch of images <\/td>2 weeks, 10-11\/2016 <\/td><\/tr>
Mr Torsten Stoeter** <\/td>Leibniz Institute for Neurobiology (DE) <\/td>Lab 1: Dr. Chong Zhang <\/td>1) Universitat Pompeu Fabra, Barcelona (ES) <\/td>\u201cExploration and Analysis of Large Microscopy Data Using ParaView\u201d <\/td>5 weeks 02-03\/2017 <\/td><\/tr>
<\/td><\/td>Lab 2: Julien Colombelli <\/td>2) Institute for Research in Biomedicine - IRB Barcelona (ES) <\/td><\/td><\/td><\/tr>
Dr Patricia Garcia-Ca\u00f1adilla** <\/td>Universitat Pompeu Fabra (ES) <\/td>Dr. Marco Stampanoni <\/td>Paul Scherrer Institute, Villigen-PSI (CH) <\/td>\u201cDetailed characterization of scar and fibrous tissue in hearts using high resolution phase-contrast X-ray imaging\u201d <\/td>2 weeks 01-02\/2017 <\/td><\/tr>
Ms. Luiza Filipis** <\/td>CNRS, Saint-Martin-d'H\u00e8res (FR) <\/td>Dr. Panayiota Poirazi <\/td> Institute of Molecular Biology and Biotechnology (IMBB), Heraklion (GR) <\/td> \"Developing NEURON models based on experimental Ca 2+ current optical measurements\" <\/td>4 weeks, 05-06\/2017 <\/td><\/tr>
Dr Victor Caldas** <\/td>Vrije Universiteit Amsterdam, Amsterdam (NL) <\/td>Dr. Mark Fricker <\/td>University of Oxford (UK) <\/td>\"Extracting graphs from symbiotic networks\" <\/td>1 week, 06\/2017 <\/td><\/tr>
Dr Alex Hargreaves** <\/td>University of Leeds (UK) <\/td>Dr. Carolina W\u00e4hlby <\/td>Centre for Image Analysis, Uppsala University (SE) <\/td>\"Analysis Workflows to resolve Aniline Blue Assay for Sperm Chromatin Condensation\" <\/td>2 weeks, 06-07\/2017 <\/td><\/tr>
Dr Irene Fondon** <\/td>University of Seville (ES) <\/td>Prof. Paula Sampaio* <\/td>Instituto de Biologia Molecular e Celular \/ i3S - Porto (PT) <\/td>\"Development of image analysis workflows for the study of cellular aging\" <\/td>2 weeks, 07\/2017 <\/td><\/tr>
Dr Tobias Rasse <\/td>EMBL - Heidelberg (DE) <\/td>Dr. Stephan Preibisch <\/td>Max Delbr\u00fcck Center for Molecular Medicine (MDC)- Berlin (DE) <\/td>\"Towards improved SPIM data analysis pipelines\" <\/td>12 weeks, 07-09\/2017 <\/td><\/tr>
Dr Janka Nozkova* <\/td> Faculty of Agrobiology and Food Resources, Nitra (SK) <\/td>Dr. David ROUSSEAU <\/td>Laboratoire CREATIS, Universit\u00e9 Lyon 1 (FR) <\/td>\"Measuring of Agrobiodiversity from the View of Image Analysis\" <\/td>1 week 07\/2017 <\/td><\/tr>
Mr Ross Laws** <\/td>Newcastle University (UK) <\/td>Dr. Eija Jokitalo <\/td>University of Helsinki (FI) <\/td> \"Improving segmentation in challenging 3D-SEM data sets using MIB\" <\/td>2 weeks 08\/2017 <\/td><\/tr>
Martin Maska*,** <\/td>Masaryk University (Brno, CR) <\/td>Dr. Carlos Ortiz de Solorzano <\/td>Cancer Imaging Lab & Platform @ CIMA - Pamplona (ES) <\/td>\"Toward Robust Segmentation and Tracking of Cells with Filopodial Protrusions in 3D Fluorescence Microscopy\" <\/td>4 weeks, 08\/2017 <\/td><\/tr>
Dr Marta Alabrudzinska** <\/td>Karolinska Institutet, Stockholm (SE) <\/td>Dr. Daniel Sage <\/td>Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Biomedical Imaging Group (CH) <\/td>\"Segmentation of intravital images for quantification of tumor growth\" <\/td>2 weeks, 09\/2017 <\/td><\/tr>
Erin Cocks** <\/td>Newcastle University (UK) <\/td>Dr. Gerd Leitinger <\/td>Research Unit Electron Microscopy Techniques, Med. Univ. Graz (AT) <\/td>\"Segmentation of SBF-SEM Data of the Locust Lobula Giant Movement Detector 2 Neuron\" <\/td>2 weeks, 10\/2017 <\/td><\/tr>
Dr. Eldar Zehorai <\/td>Weizmann Inst. Sci., Rehovot (IL) <\/td>Prof. Karl Kadler <\/td>University of Manchester (UK) <\/td>3D-morphometric analysis of SBF-SEM data of uterine ECM fibrils <\/td>1 week, 12\/2017 <\/td><\/tr>
Laura Murphy ** <\/td>MRC-IGMM, Edinburgh (UK) <\/td>Dr. Anne Carpenter <\/td>Broad Institute, Boston (USA) <\/td>Developing an image analysis service for high content microscopy data using CellProfiler and CellProfiler Analyst <\/td>4 weeks, 02\/2018 <\/td><\/tr>
Dr. Alessandra Procopio ** <\/td>Univ. Bologna (IT) <\/td>Dr. Andrea Sorrentino <\/td>ALBA Synchroton, Barcelona (ES) <\/td>Integration of post-processing analysis software of x-ray nanotomography and X-ray Absorption Near-Edge spectro-microscopy to study the early stages of bone mineralization mechanisms in differentiated bone marrow stem cells <\/td>3 weeks, 02\/2018 <\/td><\/tr>
Dr. Miguel Aroso <\/td>i3S, Porto (PT) <\/td>Dr. Marco Canepari <\/td>Univ. Grenoble (FR) <\/td>Development of a user-friendly, GUI-based toolbox for the analysis of voltage sensitive dye imaging data <\/td>3 weeks, 03\/2018 <\/td><\/tr>
Buda Bajic *, ** <\/td>Univ. Novi Sad (RS) <\/td>Dr. Moritz Kirschmann <\/td>Univ. Zuerich (CH) <\/td>Denoising of low signal-to-noise scanning electron micrographs by energy minimization and deep learning <\/td>2 weeks, 03\/2018 <\/td><\/tr>
Dr. Michael Barbier** <\/td>Univ. Antwerp (BE) <\/td>Prof. Peter Horvath <\/td>BRC, Szeged (HU) <\/td>Automated brain region recognition in fluorescently labelled brain tissue slices <\/td>3 weeks, 04\/2018 <\/td><\/tr>
Dr. Filippo Piccinini <\/td>ISRT Cancer Res Hosp (IT) <\/td>Prof. Peter Horvath <\/td>BRC, Szeged (HU) <\/td>3D high-content screening: single-cell segmentation and classification from 3D cancer spheroids <\/td>6 weeks, 06-07\/2018 <\/td><\/tr>
Dr. Magalie Feyeux** <\/td>SFR Sant\u00e9 Fran\u00e7ois Bonamy (FR) <\/td>Dr. Simon Noerrelykke <\/td>ScopeM-IDA , ETH-Zurich (CH) <\/td>Machine learning for Embryo selection for in-vitro fecundation, and organization of a bio image analysis facility. <\/td>2 weeks 08\/2018 <\/td><\/tr>
Maxime Lafarge** <\/td>Eindhoven University of Technology (NL) <\/td>Dr Anne Carpenter <\/td>Broad Institute, Boston (MA, USA) <\/td>Disentangled Generative Modeling of Cell Images <\/td>2 months 11-12\/2018 <\/td><\/tr>
Raimo Salo** <\/td> A.I.Virtanen Institute for Molecular Sciences, Kuopio (FI) <\/td>Dr Michela Fratini <\/td>IRCCS Fondazione Santa Lucia, Rome (IT) <\/td> Multimodal approach for the 3D investigation of the spinal cord and brain vascular and neuronal networks <\/td>2 weeks 11\/2018 <\/td><\/tr>
Marko Sostar** <\/td> Institute Ru\u0111er Bo\u0161kovi\u0107 (HR) <\/td>Prof. Till Bretschneider <\/td>University of Warwick (UK) <\/td> QuimP-assisted image analysis and modelling <\/td>2 weeks 12\/2018 <\/td><\/tr>
Arianne Bercowsky Rama** <\/td>EPFL, Lausanne (CH) <\/td>Dr. Jean-Yves Tinevez <\/td>Institut Pasteur, Paris (FR) <\/td>Analysis of Light Sheet Microscopy Data using Mastodon <\/td>1 week 12\/2018 <\/td><\/tr>
Dr. Chong Zhang <\/td>Universitat Pompeu Fabra (ES) <\/td>Dr. Perrine Paul-Gilloteaux <\/td>SFR Sant\u00e9 Fran\u00e7ois Bonamy, Nantes (FR) <\/td>Biomedical image analysis workflow definition through a web interface and example queries <\/td>1 week 01\/2019 <\/td><\/tr>
Harold Gomez** <\/td> ETH Zurich, Basel (CH) <\/td>Dr. Florian Jug <\/td>MPI-CBG Dresden (DE) <\/td>Tailoring content-aware restoration networks framework (CARE) to denoise and isotropize 4D light-sheet datasets of murine embryonic lung development. <\/td>3 weeks 02\/2018 <\/td><\/tr>
Nikita Moshkov*,** <\/td>BRC, Szeged (HU) <\/td>Dr. Anne Carpenter <\/td>Broad Institute, Boston (MA, USA) <\/td>Deep learning based cytoplasm segmentation for cancer tissue slices <\/td>2months 03-04\/2019 <\/td><\/tr>
Carla Pereira*,** <\/td>IPATIMUP, Porto (PT) <\/td>Dr. Carolina W\u00e4hlby <\/td>Uppsala University (SE) <\/td>Mapping intra-tumour heterogeneity of therapeutic targets in gastric cancer <\/td>1 month 03\/2019 <\/td><\/tr>
Dr. Jonas Ogaard <\/td>Oslo University Hospital (NO) <\/td>Dr John Cupitt <\/td> Imperial College London (UK) <\/td>Implementation and usage of low memory feature extraction on whole slide images for use with machine learning <\/td>2 weeks 03\/2019 <\/td><\/tr>
Dr. Ana Stojiljkovic <\/td>Universit\u00e4t Bern (CH) <\/td>Dr Davide Danovi <\/td>King's College London (UK) <\/td>High-content characterisation of canine induced pluripotent stem cells <\/td>2 weeks 03\/2019 <\/td><\/tr>
Dr. Claire Barnes <\/td>Swansea University (UK) <\/td>Dr. Anne Carpenter <\/td>Broad Institute, Boston (MA, USA) <\/td>Deep Learning for BioImage Analytics <\/td>1 month 03\/2019 <\/td><\/tr>
Martin Weigert** <\/td>MPI-CBG Dresden (DE) <\/td>Dr Juan Nunez-iglesias <\/td>Monash University (AU) <\/td>Accelerating image analysis in Python with GPUs <\/td>2 weeks 03\/2019 <\/td><\/tr>
Uwe Schmidt** <\/td>MPI-CBG Dresden (DE) <\/td> Dr Volker Hilsenstein <\/td>Monash University (AU) <\/td> A fully open source lattice light sheet workflow <\/td>2 weeks 03\/2019 <\/td><\/tr>
Mr Debayan Saha ** <\/td> Max Planck Institute of Molecular Cell Biology and Genetics (DE) <\/td> Prof Martin Booth <\/td>University of Oxford (UK) <\/td>Machine-learned phase-retrieval for image-based sensorless adaptive optics <\/td>3 weeks 03\/2019 <\/td><\/tr>
Mr Assaf Nahum ** <\/td>Ben-Gurion University of the Negev (IL) <\/td> Dr Jean-yves Tinevez <\/td> Institut Pasteur (FR) <\/td>Quantifying 3D cell-ECM interactions <\/td>2 weeks 03\/2019 <\/td><\/tr>
Marco Tarasco*,** <\/td> Center of Marine Sciences (CCMAR), Algarve (PT) <\/td> Dr Fabrice Cordeli\u00e8res <\/td> Bordeaux Imaging Center (FR) <\/td>Assessment of bone regeneration in zebrafish caudal fin through morphometric analysis of bone formation and patterning. <\/td>2 weeks 04\/2019 <\/td><\/tr>
Carlos Javier Garc\u00eda** <\/td>Universidad Carlos III de Madrid (ES) <\/td>Dr. Daniel Sage <\/td>Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Biomedical Imaging Group (CH) <\/td>Bridging Deep Neuronal Network to ImageJ <\/td>4 weeks 04\/2019 <\/td><\/tr>
Dr Tomas Majtner ** <\/td>Maersk Mc-Kinney Moller Institute (DK) <\/td>Pr. Natasa Sladoje <\/td>University of Novi Sad (RS) <\/td>Development and evaluation of \u03b1LBP-maps for improved texture-based image classification via deep learning in biomedical domain <\/td>2 weeks, 04\/2109 <\/td><\/tr>
Ms Estibaliz G\u00f3mez de Mariscal ** <\/td>Universidad Carlos III de Madrid (ES) <\/td>Dr. Daniel Sage <\/td>Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Biomedical Imaging Group (CH) <\/td>Bridging Deep Neuronal Network to ImageJ <\/td>2 weeks 07\/2019 <\/td><\/tr>
Mr Pau Carrillo Barber\u00e0 ** <\/td>Universitat de Val\u00e8ncia (ES) <\/td> Dr Andr\u00e9 Maia <\/td> IBMC-Instituto de Biologia Molecular e Celular (PT) <\/td> Deployment of bioimage analysis pipelines for high content screening assays <\/td>2 weeks 08\/2019 <\/td><\/tr>
Dr Sian Culley ** <\/td>MRC Laboratory for Molecular Cell Biology (UK) <\/td>Dr. Uwe Schmidt <\/td>MPI-CBG Dresden (DE) <\/td>Developing Machine Learning Approaches for Automated Detection of Dividing Thermophilic Archaea <\/td>2 weeks 10\/2019 <\/td><\/tr>
Dr Devrim Unay * <\/td>Izmir Democracy University (TR) <\/td>Prof Gabriella Cincotti <\/td> University Rome Tre (IT) <\/td>Automated detection and segmentation of bacteria from multimodal microscopy images <\/td>2 weeks, 01\/2020 <\/td><\/tr>
Nikita Moshkov*,** <\/td>BRC, Szeged (HU) <\/td>Dr. Anne Carpenter <\/td>Broad Institute, Boston (MA, USA) <\/td> Image-based profiling using deep learning <\/td>7 weeks 01-03\/2020 <\/td><\/tr>
Dr Debora Olivier ** <\/td>CBI \/ LBCMCP UMR 5088 CNRS\/Universit\u00e9 Toulouse III (FR) <\/td>Dr. Anne Carpenter <\/td>Broad Institute, Boston (MA, USA) <\/td>Generating an automated pipeline to track cells & foci and align them within the cell cycle using CellProfiler and CellProfiler Tracer. <\/td>2 weeks, 02\/2020 <\/td><\/tr>
Dr Jiri Tyc *,** <\/td>Biology Centre CAS (CR) <\/td>Dr Laurent Gelman <\/td>Friedrich Miescher Institute for Biomedical Research, Facility for advanced imaging and microscopy (CH) <\/td> Finding the perfect parameters for large SBEM data analysis <\/td>2 weeks 08\/2020 <\/td><\/tr>
Marco Tarasco*,** <\/td> Center of Marine Sciences (CCMAR), Algarve (PT) <\/td> Dr Fabrice Cordeli\u00e8res <\/td> Bordeaux Imaging Center (FR) <\/td>Development of a Java plug-in for the analysis of therapeutic-relevant molecules affecting bone mineralization and regeneration <\/td>2 weeks 09\/2020 <\/td><\/tr>
LEGEND <\/td><\/td><\/td><\/td><\/td><\/td><\/tr>
F <\/td>M <\/td>* Inclusiveness Target Country <\/td>** Early Career Investigator <\/td>Imaging Facility or Center\/Image Analysis Center or Facility <\/td>Research Lab <\/td><\/tr><\/tbody><\/table><\/div>WordPress Data Table Plugin<\/a><\/div><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"

Grantee, HOME Institution HOST, Lab & Institution Title Dates Dr. V\u00e9ronique Gebala ** Max Delbrueck Center for Molecular Medicine, Berlin (DE) Dr. Martin Jones The Francis Crick Institute, London (UK) Endothelial cell shape regulation by integrin beta 1 during sprouting angiogenesis in vivo 1 week, 09\/2016 Mr Hamid Fehri ** University of Sheffield, Sheffield (UK) Dr. Erik Meijering Erasmus University Medical Center, Biomedical Imaging Group Rotterdam, Rotterdam (NL) Segmentation and Interpretation of Cells in Fluorescent […]<\/p>\n","protected":false},"author":8,"featured_media":0,"parent":707,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"yoast_head":"\nPast STSMs - NEUBIAS: Network of BioImage Analysts<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/eubias.org\/NEUBIAS\/mobility-grants\/past-stsms\/\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/eubias.org\/NEUBIAS\/mobility-grants\/past-stsms\/\",\"url\":\"https:\/\/eubias.org\/NEUBIAS\/mobility-grants\/past-stsms\/\",\"name\":\"Past STSMs - 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