EBImage |
High content screening
Bioimage informatics
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Cell segmentation
|
2D brain slice region annotation: SliceMap |
Widefield microscopy
|
Image segmentation
|
2D cell tracking and analysis of morphological dynamics |
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Active contours
Cell segmentation
|
ANTs: Advanced Normalization Tools |
Bioimage informatics
|
Image segmentation
|
APP (All-path pruning) |
Confocal microscopy
|
Image thresholding
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Adaptive Thresholding (EBImage) |
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Cell segmentation
Adaptative thresholding
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Adipocyte quantification ImageJ by Baecker |
Digital histology
|
Cell segmentation
|
Adipocyte quantification MATLAB |
Digital histology
|
Cell segmentation
|
Adiposoft |
Digital histology
|
Watershed
Cell segmentation
Image thresholding
|
Aivia |
Machine learning
|
Cell segmentation
Image segmentation
|
Arabidopsis Seedlings Tool |
Bioimage informatics
|
Image thresholding
|
Blob segmentation |
|
Image segmentation
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Blood vessel segmentation and network analysis |
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Image segmentation
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Cell or particle counting and scoring the percentage of stained objects |
Fluorescence microscopy
|
Cell segmentation
|
Cell segmentation and quantification with CellX |
Bright field microscopy
Phase contrast microscopy
|
Image segmentation
|
Cell segmentation in phase contrast images |
Phase contrast microscopy
|
Active contours
Cell segmentation
|
CellProfiler Examples - Speckle Counting |
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Image segmentation
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Counting Clumped Cells |
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Cell segmentation
|
DNA MicroArray Image Processing Case Study |
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Image segmentation
|
FibrilTool |
Statistics
Microscopy
|
Interactive segmentation
|
Find cells using nuclear and membrane fluorescence |
|
Active contours
Cell segmentation
|
Find, Draw and Measure Wells in a Multi-Well Plate Picture |
|
Image segmentation
|
FlyLimbTracker |
Fluorescence microscopy
Microscopy
|
Interactive segmentation
Active contours
|
FreeD |
Bioimage informatics
|
Image segmentation
|
Golgi Segmentation by Active Mask framework |
|
Cell segmentation
|
HyphaTracker |
Light microscopy
Bright field microscopy
|
Image segmentation
|
ICY Active Cells SDK |
|
Active contours
Image segmentation
|
ITK |
|
Image thresholding
Image segmentation
|
ImagePy |
Bioimage informatics
|
Image segmentation
|
ImmunoMembrane |
Digital histology
|
Cell segmentation
|
JFilament |
|
Active contours
|
Leaf Segmentation using Trainable Weka Segmentation plugin |
Machine learning
|
Image segmentation
|
LimeSeg |
|
Image segmentation
|
Lymphatic Vessel Density calculation |
Digital histology
|
Image segmentation
|
MAARS |
Machine learning
Bright field microscopy
|
Cell segmentation
|
MATLAB CellDetector |
Digital histology
Machine learning
Fluorescence microscopy
Phase contrast microscopy
|
Cell segmentation
|
MATLAB Image Segmentation Tutorial |
|
Image segmentation
|
MIPAV |
Computerized tomography
Bioimage informatics
Magnetic resonance imaging
Imaging
|
Image thresholding
Image segmentation
|
MOST-Raytracer |
Tomography
Imaging
|
Image segmentation
|
Mahotas |
|
Watershed
Image thresholding
|
McLuigi |
Electron microscopy
|
Image segmentation
|
Measure Rosette Area Tool |
Bioimage informatics
|
Image thresholding
|
Microscopy Image Browser (MIB) |
Topic
|
Image segmentation
|
Microtubule Length Analysis |
|
Image segmentation
|
Microtubules Tool (3D) |
Bioimage informatics
|
Image thresholding
|
MorphoLibJ |
Bioimage informatics
Microscopy
|
Watershed
Cell segmentation
Image segmentation
|
MorphoLibJ: using morphological reconstructions to isolate objects |
|
Image segmentation
|
NET - Network Extraction Tool |
Digital histology
|
Image thresholding
|
Neuroconductor |
Bioimage informatics
|
Image segmentation
|
NiftyNet |
Machine learning
Magnetic resonance imaging
Imaging
|
Image segmentation
|
Object Classification using ilastik |
|
Image segmentation
|
OpenCV / Image Processing |
|
Watershed
Image thresholding
|
Orbit |
Digital histology
Machine learning
|
Interactive segmentation
Cell segmentation
|
Oufti |
Fluorescence microscopy
Bright field microscopy
|
Cell segmentation
|
PHANTAST for FIJI |
Phase contrast microscopy
|
Cell segmentation
|
Pixel Classification using ilastik |
|
Image segmentation
|
Protein Micro-array Analysis |
|
Image segmentation
|
QCAnet |
Machine learning
Fluorescence microscopy
|
Image segmentation
|
QuPath |
Digital histology
|
Interactive segmentation
Cell segmentation
|
Quantitative analysis of focal adhesions |
Fluorescence microscopy
|
Image thresholding
Image segmentation
|
QuimP |
Fluorescence microscopy
|
Interactive segmentation
Cell segmentation
|
Rivulet 2 |
|
Image thresholding
|
SLDC (Segment Locate Dispatch Classify) |
Machine learning
|
Cell segmentation
|
SOAX |
Fluorescence microscopy
Confocal fluorescence microscopy
|
Active contours
|
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh |
Fluorescence microscopy
|
Image segmentation
|
Segmentation of Clustered Cells in MATLAB |
Fluorescence microscopy
|
Watershed
Cell segmentation
|
Simple Tracing DF-Tracing |
|
Adaptative thresholding
Image segmentation
|
Splitting clustered cells |
|
Watershed
|
Spot Detector |
Light microscopy
Electron microscopy
Bright field microscopy
|
Cell segmentation
Image segmentation
|
Squassh |
|
Cell segmentation
|
SuRVoS |
Serial block-face scanning electron microscopy
Electron tomography
Electron microscopy
Focused ion beam scanning electron microscopy
Machine learning
Scanning electron microscopy
Cryo electron tomography
|
Interactive segmentation
Image segmentation
|
TReMAP |
Confocal microscopy
|
Image thresholding
|
Tensorflow |
Machine learning
|
Image segmentation
|
Tissue Cell Segmentation |
Fluorescence microscopy
|
Watershed
Image segmentation
|
Track cell intensity |
|
Active contours
|
Tracking of focal adhesions in 2D time lapse movies |
|
Image segmentation
|
Trainable Weka Segmentation |
Machine learning
|
Image segmentation
|
VMTK: Vascular Modeling Toolkit |
Light-sheet microscopy
Magnetic resonance imaging
|
Image segmentation
|
Voronoi Segmentation (KNIME) |
Digital histology
|
Image segmentation
|
WIS-NeuroMath |
|
Image segmentation
|
WIS-PhagoTracker |
|
Image segmentation
|
Wound healing assay: analysis in CellProfiler |
Topic
|
Image segmentation
|
Wound healing assay: analysis in ImageJ |
|
Image segmentation
|
ZEN Intellesis Trainable Segmentation |
Digital histology
Fluorescence microscopy
Electron microscopy
High content screening
Machine learning
Light microscopy
|
Image segmentation
|
classification of hemp fibers based on morphological features |
Microscopy
|
Watershed
|
cvMatch_Template |
Electron microscopy
|
Image segmentation
|
ilastik |
Digital histology
Machine learning
In-silico reconstruction
|
Image segmentation
|
ilastik - Carving |
|
Interactive segmentation
Image segmentation
|
slideToolkit |
Digital histology
|
Image segmentation
|